Software

Genomic prediction of phenotype 

Screen Shot 2015-07-11 at 6.48.49 pm• SparSNP – Regularized linear models of genetic data for phenotype prediction
BMC Bioinformatics 2012 | Code

Analysis of multi-omics data

Screen Shot 2015-07-11 at 6.18.43 pm• flashpca – Biobank-scale principal components analysis and canonical correlation analysis
flashpca1: PLoS One, 2014 | flashpca2: Bioinformatics, 2017 | Code

NetRep
• NetRep – Replication and preservation testing of omics networks
Cell Systems, 2016 | Code

BootstrapQTL2• BootstrapQTL – Quantitative trait locus mapping tool with accurate effect size estimates
BioRxiv, 2017 | Code

Screen Shot 2015-07-11 at 6.23.32 pm
• Illuminus – Accurate genotype calling for the Illumina platform
Bioinformatics, 2007 | Code

Sequence analysis

Screen Shot 2015-07-11 at 6.43.33 pm• SRST2 – Genomic surveillance of bacterial pathogens
Genome Medicine 2014 | Code | Illumina BaseSpace | Behind the SRST2 project

Location University of Cambridge, Department of Public Health and Primary Care, Strangeways Research Laboratory, Worts Causeway, Cambridge, CB1 8RN | Baker Heart and Diabetes Institute, PO Box 6492, Melbourne Victoria 3004, Australia Phone +61 3 8532 1111
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